Transcript: ENST00000353468.4 SIGMAR1-003

Description

sigma non-opioid intracellular receptor 1 [Source:HGNC Symbol;Acc:8157]

Gene Synonyms

ALS16, OPRS1, SIG-1R, SR-BP, SR-BP1, SRBP, hSigmaR1, sigma1R

Location

Chromosome 9: 34,634,719-34,637,741 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 5 domains and features, is associated with 1596 variant alleles and maps to 528 oligo probes.

Gene

This transcript is a product of gene ENSG00000147955.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000277010.4	SIGMAR1-001	1656	223aa	ENSP00000277010.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6562	Q5T1J1 Q99720	NM_005866.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378892.1	SIGMAR1-002	1743	134aa	ENSP00000368170.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T1J1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000477726.1	SIGMAR1-008	840	192aa	ENSP00000420022.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6563	A2A3U5 Q99720	NM_147157.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000353468.4	SIGMAR1-003	1582	106aa	ENSP00000434453.1	Nonsense mediated decay		Q99720	-	-
ENST00000461426.1	SIGMAR1-006	939	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000497006.1	SIGMAR1-007	610	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000478146.1	SIGMAR1-005	485	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 1,582 bps, Translation length: 106 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q99720

Version

ENST00000353468.4

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000052206 (version 3)

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Transcript: ENST00000353468.4 SIGMAR1-003

Summary