Transcript: ENST00000529462.1 SLC39A4-005

Description

solute carrier family 39 (zinc transporter), member 4 [Source:HGNC Symbol;Acc:17129]

Gene Synonyms

AEZ, AWMS2, ZIP4

Location

Chromosome 8: 145,635,779-145,638,969 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 1947 variant alleles and maps to 218 oligo probes.

Gene

This transcript is a product of gene ENSG00000147804.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000301305.3	SLC39A4-001	2174	647aa	ENSP00000301305.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6424	Q6P5W5 Q9NX22	NM_130849.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000276833.5	SLC39A4-002	2297	622aa	ENSP00000276833.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43782	A6NDY5 Q9NX22	NM_017767.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000526658.1	SLC39A4-010	583	184aa	ENSP00000434512.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PQ16	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000531013.1	SLC39A4-006	795	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000527148.1	SLC39A4-009	684	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000532718.1	SLC39A4-004	668	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000530807.1	SLC39A4-007	498	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000531789.1	SLC39A4-008	361	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000529462.1	SLC39A4-005	2778	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 2,778 bps,

Version

ENST00000529462.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000382683 (version 1)

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Transcript: ENST00000529462.1 SLC39A4-005

Summary