Transcript: ENST00000301305.3 SLC39A4-001

Description

solute carrier family 39 (zinc transporter), member 4 [Source:HGNC Symbol;Acc:17129]

Gene Synonyms

AEZ, AWMS2, ZIP4

Location

Chromosome 8: 145,637,798-145,642,279 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 22 domains and features, is associated with 3683 variant alleles and maps to 376 oligo probes.

Gene

This transcript is a product of gene ENSG00000147804.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000276833.5	SLC39A4-002	2297	622aa	ENSP00000276833.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43782	A6NDY5 Q9NX22	NM_017767.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000301305.3	SLC39A4-001	2174	647aa	ENSP00000301305.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6424	Q6P5W5 Q9NX22	NM_130849.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000526658.1	SLC39A4-010	583	184aa	ENSP00000434512.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PQ16	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000531013.1	SLC39A4-006	795	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000527148.1	SLC39A4-009	684	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000532718.1	SLC39A4-004	668	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000530807.1	SLC39A4-007	498	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000531789.1	SLC39A4-008	361	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000529462.1	SLC39A4-005	2778	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 2,174 bps, Translation length: 647 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6P5W5

CCDS

This transcript is a member of the Human CCDS set: CCDS6424

Version

ENST00000301305.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000382688 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000301305.3 SLC39A4-001

Summary