Transcript: ENST00000522933.1 PXDNL-003

Description

peroxidasin homolog (Drosophila)-like [Source:HGNC Symbol;Acc:26359]

Gene Synonyms

FLJ25471, PMR1, PRM1, VPO2

Location

Chromosome 8: 52,232,139-52,321,539 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 20 domains and features, is associated with 42070 variant alleles and maps to 278 oligo probes.

Gene

This transcript is a product of gene ENSG00000147485.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000356297.4	PXDNL-002	4805	1463aa	ENSP00000348645.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47855	A1KZ92	NM_144651.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543296.1	PXDNL-201	4554	1316aa	ENSP00000444865.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A1KZ92 K4DIA6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000522933.1	PXDNL-003	1925	537aa	ENSP00000428114.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000522628.1	PXDNL-004	2258	582aa	ENSP00000429855.1	Nonsense mediated decay		K4DIA6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000519183.1	PXDNL-001	768	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,925 bps, Translation length: 537 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000522933.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000377904 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000522933.1 PXDNL-003

Summary