Transcript: ENST00000406757.2 GPC3-002

Description

glypican 3 [Source:HGNC Symbol;Acc:4451]

Gene Synonyms

DGSX, GTR2-2, MXR7, OCI-5, OCI5, SDYS, SGB, SGBS, SGBS1

Location

About this transcript

This transcript has 5 exons, is annotated with 4 domains and features, is associated with 41814 variant alleles and maps to 172 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000394299.2	GPC3-201	2379	603aa	ENSP00000377836.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55496	P51654	NM_001164617.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370818.3	GPC3-001	2568	580aa	ENSP00000359854.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14638	I6QTG3 P51654	NM_004484.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543339.1	GPC3-202	1581	526aa	ENSP00000444222.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55495	P51654	NM_001164619.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000406757.2	GPC3-002	836	256aa	ENSP00000385307.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 836 bps, Translation length: 256 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000406757.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000058357 (version 1)