Transcript: ENST00000508754.1 YIPF5-006

Description

Yip1 domain family, member 5 [Source:HGNC Symbol;Acc:24877]

Gene Synonyms

FINGER5, FinGER5, SB140, SMAP-5, SMAP5, YIP1A

Location

Chromosome 5: 143,543,427-143,550,204 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 2902 variant alleles and maps to 214 oligo probes.

Gene

This transcript is a product of gene ENSG00000145817.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000274496.5	YIPF5-001	3147	257aa	ENSP00000274496.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4279	E5RGR9 E5RHH4 Q969M3	NM_030799.8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000448443.2	YIPF5-002	2255	257aa	ENSP00000397704.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4279	E5RGR9 E5RHH4 Q969M3	NM_001024947.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513112.1	YIPF5-003	2135	203aa	ENSP00000425422.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS64277	E5RGR9 E5RHH4 Q969M3	NM_001271732.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000519064.1	YIPF5-008	684	177aa	ENSP00000429777.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RGR9 E5RHH4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000522203.1	YIPF5-009	653	101aa	ENSP00000428715.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RGR9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000508754.1	YIPF5-006	793	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 793 bps,

Version

ENST00000508754.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000371890 (version 1)

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Transcript: ENST00000508754.1 YIPF5-006

Summary