Transcript: ENST00000515590.1 HAPLN1-003

Description

hyaluronan and proteoglycan link protein 1 [Source:HGNC Symbol;Acc:2380]

Gene Synonyms

CRTL1

Location

Chromosome 5: 82,948,285-83,016,632 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 9 domains and features, is associated with 28674 variant alleles and maps to 117 oligo probes.

Gene

This transcript is a product of gene ENSG00000145681.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000274341.4	HAPLN1-001	5607	354aa	ENSP00000274341.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4061	D6RBS1 D6RBX9 D6RC59 D6RG04 P10915	NM_001884.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000514416.1	HAPLN1-002	1145	161aa	ENSP00000421726.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RAK7 D6RBX9 D6RC59	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000510978.1	HAPLN1-006	989	258aa	ENSP00000422592.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RBS1 D6RBX9 D6RC59 D6RG04	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000508307.1	HAPLN1-005	799	199aa	ENSP00000421341.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RBX9 D6RC59 D6RG04	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000504713.1	HAPLN1-004	788	158aa	ENSP00000422522.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RBX9 D6RC59	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000503117.1	HAPLN1-007	568	182aa	ENSP00000426610.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RFI7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000515590.1	HAPLN1-003	560	153aa	ENSP00000423836.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RC59	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 560 bps, Translation length: 153 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000515590.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000369778 (version 1)

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Transcript: ENST00000515590.1 HAPLN1-003

Summary