Transcript: ENST00000507906.1 USP53-008

Description

ubiquitin specific peptidase 53 [Source:HGNC Symbol;Acc:29255]

Gene Synonyms

KIAA1350

Location

Chromosome 4: 120,182,948-120,192,508 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 4 domains and features, is associated with 3669 variant alleles and maps to 124 oligo probes.

Gene

This transcript is a product of gene ENSG00000145390.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000450251.1	USP53-201	6072	1073aa	ENSP00000409906.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43265	Q70EK8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000274030.6	USP53-001	5936	1073aa	ENSP00000274030.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43265	Q70EK8	NM_019050.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000509769.1	USP53-003	4803	327aa	ENSP00000426628.1	Nonsense mediated decay		D6RF54	-	-
ENST00000507906.1	USP53-008	546	64aa	ENSP00000421729.1	Nonsense mediated decay		H0Y8Q1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000510737.1	USP53-006	534	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000514305.1	USP53-005	504	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000507597.1	USP53-007	503	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000514665.1	USP53-002	4233	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000510852.1	USP53-004	2437	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 546 bps, Translation length: 64 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000507906.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000364571 (version 2)

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Transcript: ENST00000507906.1 USP53-008

Summary