Transcript: ENST00000488010.1 TMF1-002

Description

TATA element modulatory factor 1 [Source:HGNC Symbol;Acc:11870]

Gene Synonyms

ARA160, TMF

Location

About this transcript

This transcript has 16 exons, is annotated with 14 domains and features, is associated with 13054 variant alleles and maps to 545 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000398559.2	TMF1-001	6849	1093aa	ENSP00000381567.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43105	P82094	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543976.1	TMF1-201	6886	1096aa	ENSP00000438706.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P82094	NM_007114.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000488010.1	TMF1-002	3399	775aa	ENSP00000419330.1	Nonsense mediated decay		F8WF45	-	-
ENST00000489370.1	TMF1-005	372	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000477872.1	TMF1-004	222	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 10, Transcript length: 3,399 bps, Translation length: 775 residues

Version

ENST00000488010.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000352107 (version 1)