Transcript: ENST00000393503.2 CNGA3-004

Description

cyclic nucleotide gated channel alpha 3 [Source:HGNC Symbol;Acc:2150]

Gene Synonyms

ACHM2, CCNC1, CCNCa, CCNCalpha, CNCG3, CNG3

Location

Chromosome 2: 98,996,364-99,006,235 forward strand.

About this transcript

This transcript has 2 exons, is associated with 4576 variant alleles and maps to 64 oligo probes.

Gene

This transcript is a product of gene ENSG00000144191.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000393504.1	CNGA3-201	3841	694aa	ENSP00000377140.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2034	Q16281	NM_001298.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000272602.2	CNGA3-001	3470	694aa	ENSP00000272602.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2034	Q16281	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409937.1	CNGA3-003	2615	698aa	ENSP00000386761.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PF93	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000436404.2	CNGA3-002	2504	676aa	ENSP00000410070.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42719	Q16281	NM_001079878.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000393503.2	CNGA3-004	569	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 569 bps,

Version

ENST00000393503.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000329559 (version 1)

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Transcript: ENST00000393503.2 CNGA3-004

Summary