Description
regulatory factor X, 5 (influences HLA class II expression) [Source:HGNC Symbol;Acc:9986]
Location
Chromosome 1: 151,317,618-151,319,311 reverse strand.
About this transcript
This transcript has 6 exons, is annotated with 2 domains and features, is associated with 756 variant alleles and maps to 153 oligo probes.
Gene
This transcript is a product of gene ENSG00000143390.13 Show transcript tableHide transcript table
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000290524.4 | RFX5-001 | 3576 | 616aa | ENSP00000290524.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS994 | F2Z2G0 F6R6G4 F6S3S0 F6TYI9 F6U6P3 F6UE82 F6X8N2 F6X9D6 F8W689 P48382 Q9UG77 | NM_001025603.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000368870.2 | RFX5-020 | 2459 | 616aa | ENSP00000357864.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS994 | F2Z2G0 F6R6G4 F6S3S0 F6TYI9 F6U6P3 F6UE82 F6X8N2 F6X9D6 F8W689 P48382 Q9UG77 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000452671.2 | RFX5-002 | 2355 | 616aa | ENSP00000389130.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS994 | F2Z2G0 F6R6G4 F6S3S0 F6TYI9 F6U6P3 F6UE82 F6X8N2 F6X9D6 F8W689 P48382 Q9UG77 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000452513.2 | RFX5-201 | 2100 | 576aa | ENSP00000398388.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B7Z848 F2Z2G0 Q9UG77 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000392746.3 | RFX5-008 | 2056 | 596aa | ENSP00000376502.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F2Z2G0 F6R6G4 F6S3S0 F6TYI9 F6U6P3 F6UE82 F6X8N2 F6X9D6 F8W689 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000450506.1 | RFX5-003 | 903 | 184aa | ENSP00000398666.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F2Z2G0 F6R6G4 F6S3S0 F6TYI9 F6UE82 F6X8N2 F6X9D6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000422595.1 | RFX5-004 | 902 | 229aa | ENSP00000399095.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F2Z2G0 F6R6G4 F6S3S0 F6TYI9 F6U6P3 F6UE82 F6X8N2 F6X9D6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000436637.1 | RFX5-010 | 765 | 235aa | ENSP00000390769.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0Y4B4 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000437327.1 | RFX5-011 | 597 | 105aa | ENSP00000413153.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F2Z2G0 F6S3S0 F6X8N2 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000430227.1 | RFX5-012 | 585 | 123aa | ENSP00000387618.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F2Z2G0 F6S3S0 F6TYI9 F6X8N2 F6X9D6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000412774.1 | RFX5-005 | 562 | 117aa | ENSP00000396810.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F2Z2G0 F6S3S0 F6TYI9 F6X8N2 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000436271.1 | RFX5-021 | 545 | 96aa | ENSP00000390720.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F2Z2G0 F6S3S0 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000458484.1 | RFX5-009 | 537 | 165aa | ENSP00000409187.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F2Z2G0 F6R6G4 F6S3S0 F6TYI9 F6X8N2 F6X9D6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000444392.1 | RFX5-014 | 596 | 50aa | ENSP00000412900.1 | Nonsense mediated decay | F2Z2G0 | - | - | |
| ENST00000435314.1 | RFX5-018 | 583 | 42aa | ENSP00000415012.1 | Nonsense mediated decay | F8WDU3 | - | - | |
| ENST00000452456.1 | RFX5-013 | 567 | 50aa | ENSP00000405067.1 | Nonsense mediated decay | F2Z2G0 | - | - | |
| ENST00000421986.1 | RFX5-017 | 558 | 44aa | ENSP00000399372.1 | Nonsense mediated decay | F8WFE4 | - | - | |
| ENST00000478564.1 | RFX5-019 | 555 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000494217.1 | RFX5-016 | 588 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000479681.1 | RFX5-015 | 583 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000475144.1 | RFX5-007 | 519 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000469513.1 | RFX5-006 | 396 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |