Transcript: ENST00000369795.3 STRIP1-001

Description

striatin interacting protein 1 [Source:HGNC Symbol;Acc:25916]

Gene Synonyms

FAM40A, FAR11A, FLJ14743, KIAA1761

Location

Chromosome 1: 110,577,238-110,597,263 forward strand.

About this transcript

This transcript has 21 exons, is annotated with 9 domains and features, is associated with 9326 variant alleles and maps to 516 oligo probes.

Gene

This transcript is a product of gene ENSG00000143093.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000369795.3	STRIP1-001	3265	837aa	ENSP00000358810.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30798	Q5VSL9	NM_033088.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000369796.1	STRIP1-002	3125	742aa	ENSP00000358811.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59197	Q5VSL9	NM_001270768.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000369794.2	STRIP1-201	658	212aa	ENSP00000358809.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5VSL9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000485775.1	STRIP1-003	3363	212aa	ENSP00000476025.1	Nonsense mediated decay		Q5VSL9	-	-
ENST00000461054.1	STRIP1-007	577	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489059.1	STRIP1-005	546	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000473429.1	STRIP1-010	4870	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000535003.1	STRIP1-006	810	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000539541.1	STRIP1-009	694	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000540970.1	STRIP1-008	536	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 21, Coding exons: 21, Transcript length: 3,265 bps, Translation length: 837 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5VSL9

CCDS

This transcript is a member of the Human CCDS set: CCDS30798

Version

ENST00000369795.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000032213 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000369795.3 STRIP1-001

Summary