Transcript: ENST00000562592.1 KATNB1-003

Description

katanin p80 (WD repeat containing) subunit B 1 [Source:HGNC Symbol;Acc:6217]

Gene Synonyms

KAT

Location

Chromosome 16: 57,769,651-57,785,967 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 24 domains and features, is associated with 6975 variant alleles and maps to 209 oligo probes.

Gene

This transcript is a product of gene ENSG00000140854.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000379661.3	KATNB1-001	2664	655aa	ENSP00000368982.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10788	H3BPK1 H3BTV8 Q9BVA0	NM_005886.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000562592.1	KATNB1-003	853	210aa	ENSP00000455350.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BPK1 H3BTV8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000563462.1	KATNB1-008	827	276aa	ENSP00000457334.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000566726.1	KATNB1-010	728	208aa	ENSP00000455270.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BPD8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000569627.1	KATNB1-005	622	117aa	ENSP00000457046.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BT67 H3BTV8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000566785.1	KATNB1-004	619	79aa	ENSP00000457347.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BTV8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000566611.1	KATNB1-002	3854	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000563127.1	KATNB1-006	733	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000569018.1	KATNB1-009	668	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000562542.1	KATNB1-007	512	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 7, Transcript length: 853 bps, Translation length: 210 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000562592.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000433299 (version 1)

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Transcript: ENST00000562592.1 KATNB1-003

Summary