Transcript: ENST00000563544.1 ARMC5-003

Description

armadillo repeat containing 5 [Source:HGNC Symbol;Acc:25781]

Gene Synonyms

FLJ13063

Location

Chromosome 16: 31,470,173-31,478,405 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 28 domains and features, is associated with 5006 variant alleles and maps to 465 oligo probes.

Gene

This transcript is a product of gene ENSG00000140691.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000268314.4	ARMC5-201	3612	935aa	ENSP00000268314.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45472	Q96C12	NM_001105247.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000457010.2	ARMC5-002	4844	725aa	ENSP00000399561.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42155	Q96C12	NM_024742.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000408912.3	ARMC5-001	3626	1030aa	ENSP00000386125.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KQ26	NM_001288767.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000563544.1	ARMC5-003	3549	935aa	ENSP00000456877.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45472	Q96C12	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538189.1	ARMC5-203	3454	967aa	ENSP00000443995.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H156	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000564900.1	ARMC5-004	2072	598aa	ENSP00000456571.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EMQ9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000412665.2	ARMC5-202	2072	579aa	ENSP00000400183.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EMQ9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000564514.2	ARMC5-006	586	10aa	ENSP00000454430.2	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000570119.2	ARMC5-007	723	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 3,549 bps, Translation length: 935 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96C12

CCDS

This transcript is a member of the Human CCDS set: CCDS45472

Version

ENST00000563544.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000432847 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000563544.1 ARMC5-003

Summary