Transcript: ENST00000521239.1 NCOA2-007

Description

nuclear receptor coactivator 2 [Source:HGNC Symbol;Acc:7669]

Gene Synonyms

BHLHE75, GRIP1, KAT13C, NCoA-2, SRC2, TIF2, bHLHe75

Location

Chromosome 8: 71,038,844-71,040,982 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 929 variant alleles and maps to 87 oligo probes.

Gene

This transcript is a product of gene ENSG00000140396.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000452400.2	NCOA2-001	8447	1464aa	ENSP00000399968.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47872	Q15596	NM_006540.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000518363.2	NCOA2-005	1834	590aa	ENSP00000429132.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8WAJ2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000267974.4	NCOA2-201	1760	552aa	ENSP00000267974.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8WAJ2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000520416.1	NCOA2-003	526	8aa	ENSP00000430850.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000519724.1	NCOA2-004	438	16aa	ENSP00000430348.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000518287.2	NCOA2-002	6087	946aa	ENSP00000430148.2	Nonsense mediated decay		E7EWM1	-	-
ENST00000524223.1	NCOA2-008	717	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000521239.1	NCOA2-007	563	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000522054.1	NCOA2-006	419	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 563 bps,

Version

ENST00000521239.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000379699 (version 1)

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Transcript: ENST00000521239.1 NCOA2-007

Summary