Transcript: ENST00000562465.1 CDAN1-002

Description

codanin 1 [Source:HGNC Symbol;Acc:1713]

Gene Synonyms

CDA-I, CDA1, CDAI, DLT, PRO1295

Location

About this transcript

This transcript has 15 exons, is annotated with 4 domains and features, is associated with 4771 variant alleles and maps to 454 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000356231.3	CDAN1-001	4637	1227aa	ENSP00000348564.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32209	H3BM60 Q8IWY9	NM_138477.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000563260.1	CDAN1-005	285	95aa	ENSP00000455536.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BPZ6	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000562465.1	CDAN1-002	2562	347aa	ENSP00000454246.1	Nonsense mediated decay		H3BM60	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000563604.1	CDAN1-004	2076	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000565930.1	CDAN1-003	408	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 11, Transcript length: 2,562 bps, Translation length: 347 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000562465.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000431101 (version 1)