Transcript: ENST00000558761.1 HDC-002

Description

histidine decarboxylase [Source:HGNC Symbol;Acc:4855]

Location

Chromosome 15: 50,545,117-50,557,923 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 5500 variant alleles and maps to 203 oligo probes.

Gene

This transcript is a product of gene ENSG00000140287.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000267845.3	HDC-001	2705	662aa	ENSP00000267845.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10134	P19113	NM_002112.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543581.1	HDC-004	2180	629aa	ENSP00000440252.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZM01	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000559683.1	HDC-007	545	178aa	ENSP00000453183.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YLF0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000559816.1	HDC-005	2046	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000558679.1	HDC-003	1466	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000558761.1	HDC-002	1333	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000559190.1	HDC-008	1017	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 1,333 bps,

Version

ENST00000558761.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000418289 (version 1)

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Transcript: ENST00000558761.1 HDC-002

Summary