Transcript: ENST00000560039.1 NIPA2-009

Description

non imprinted in Prader-Willi/Angelman syndrome 2 [Source:HGNC Symbol;Acc:17044]

Location

Chromosome 15: 23,019,819-23,034,378 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 6 domains and features, is associated with 8249 variant alleles and maps to 109 oligo probes.

Gene

This transcript is a product of gene ENSG00000140157.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000337451.3	NIPA2-001	3233	360aa	ENSP00000337618.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10010	H0YMQ7 Q8N8Q9	NM_030922.6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000398014.2	NIPA2-201	3130	360aa	ENSP00000381096.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10010	H0YMQ7 Q8N8Q9	NM_001008860.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000398013.3	NIPA2-003	2280	360aa	ENSP00000381095.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10010	H0YMQ7 Q8N8Q9	NM_001008892.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000359727.4	NIPA2-002	1531	341aa	ENSP00000352762.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32174	Q8N8Q9	NM_001184888.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539711.2	NIPA2-004	1412	341aa	ENSP00000437746.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32174	Q8N8Q9	NM_001008894.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560039.1	NIPA2-009	554	59aa	ENSP00000453700.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YMQ7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000559571.1	NIPA2-007	673	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000560205.1	NIPA2-006	589	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000561072.1	NIPA2-008	574	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000560762.1	NIPA2-005	534	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 554 bps, Translation length: 59 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000560039.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000415643 (version 1)

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Transcript: ENST00000560039.1 NIPA2-009

Summary