Transcript: ENST00000428209.2 PRDM5-006

Description

PR domain containing 5 [Source:HGNC Symbol;Acc:9349]

Gene Synonyms

BCS2, PFM2

Location

Chromosome 4: 121,615,978-121,844,013 reverse strand.

About this transcript

This transcript has 15 exons, is annotated with 88 domains and features, is associated with 96314 variant alleles and maps to 445 oligo probes.

Gene

This transcript is a product of gene ENSG00000138738.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264808.3	PRDM5-001	5330	630aa	ENSP00000264808.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3716	Q9NQX1	NM_018699.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000394435.2	PRDM5-002	2492	111aa	ENSP00000377955.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9NQX1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000428209.2	PRDM5-006	2338	599aa	ENSP00000404832.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9NQX1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000515109.1	PRDM5-005	2259	501aa	ENSP00000422309.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q0VAI9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000502409.1	PRDM5-009	1044	145aa	ENSP00000424861.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000506065.1	PRDM5-011	696	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000505033.1	PRDM5-007	576	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000513741.1	PRDM5-012	210	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000505484.1	PRDM5-004	2396	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000512845.1	PRDM5-003	1249	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000503661.1	PRDM5-010	847	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000507611.1	PRDM5-008	535	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 15, Transcript length: 2,338 bps, Translation length: 599 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NQX1

Version

ENST00000428209.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000363931 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000428209.2 PRDM5-006

Summary