Transcript: ENST00000558937.1 SMAD6-004

Description

SMAD family member 6 [Source:HGNC Symbol;Acc:6772]

Gene Synonyms

AOVD2, HsT17432, MADH6, MADH7

Location

Chromosome 15: 67,004,035-67,009,875 forward strand.

About this transcript

This transcript has 3 exons, is associated with 2763 variant alleles and maps to 115 oligo probes.

Gene

This transcript is a product of gene ENSG00000137834.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000288840.5	SMAD6-001	2987	496aa	ENSP00000288840.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10221	O43541	NM_005585.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000457357.2	SMAD6-202	1940	338aa	ENSP00000396961.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O43541	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000338426.4	SMAD6-201	1283	235aa	ENSP00000345054.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45287	O43541	NM_001142861.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558937.1	SMAD6-004	632	55aa	ENSP00000452694.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YK80	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000557916.1	SMAD6-002	1401	338aa	ENSP00000452955.1	Nonsense mediated decay		O43541	-	-
ENST00000559931.1	SMAD6-003	573	62aa	ENSP00000453446.1	Nonsense mediated decay		H0YK80 H0YM33	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 632 bps, Translation length: 55 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000558937.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000417453 (version 2)

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Transcript: ENST00000558937.1 SMAD6-004

Summary