Transcript: ENST00000288840.5 SMAD6-001

Description

SMAD family member 6 [Source:HGNC Symbol;Acc:6772]

Gene Synonyms

AOVD2, HsT17432, MADH6, MADH7

Location

About this transcript

This transcript has 4 exons, is annotated with 19 domains and features, is associated with 35868 variant alleles and maps to 477 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000288840.5	SMAD6-001	2987	496aa	ENSP00000288840.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10221	O43541	NM_005585.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000457357.2	SMAD6-202	1940	338aa	ENSP00000396961.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O43541	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000338426.4	SMAD6-201	1283	235aa	ENSP00000345054.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45287	O43541	NM_001142861.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558937.1	SMAD6-004	632	55aa	ENSP00000452694.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YK80	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000557916.1	SMAD6-002	1401	338aa	ENSP00000452955.1	Nonsense mediated decay		O43541	-	-
ENST00000559931.1	SMAD6-003	573	62aa	ENSP00000453446.1	Nonsense mediated decay		H0YK80 H0YM33	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 2,987 bps, Translation length: 496 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O43541

CCDS

This transcript is a member of the Human CCDS set: CCDS10221

Version

ENST00000288840.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000256953 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.