Transcript: ENST00000560840.1 IREB2-004

Description

iron-responsive element binding protein 2 [Source:HGNC Symbol;Acc:6115]

Gene Synonyms

ACO3, IRP2, IRP2AD

Location

Chromosome 15: 78,729,773-78,757,606 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 4 domains and features, is associated with 12224 variant alleles and maps to 118 oligo probes.

Gene

This transcript is a product of gene ENSG00000136381.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000258886.8	IREB2-001	6354	963aa	ENSP00000258886.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10302	H0YLE0 P48200	NM_004136.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560440.1	IREB2-002	4396	343aa	ENSP00000452938.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YKU0 H0YLE0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560840.1	IREB2-004	558	38aa	ENSP00000453172.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YLE0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000559091.1	IREB2-009	268	89aa	ENSP00000453863.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000558570.1	IREB2-003	2917	220aa	ENSP00000454063.1	Nonsense mediated decay		H0YLE0 H0YNL8	-	-
ENST00000558525.1	IREB2-008	865	51aa	ENSP00000453058.1	Nonsense mediated decay		H0YL48	-	-
ENST00000559215.1	IREB2-006	572	46aa	ENSP00000453532.1	Nonsense mediated decay		H0YMA8	-	-
ENST00000559427.1	IREB2-007	608	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000560454.1	IREB2-005	545	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000559676.1	IREB2-010	973	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 558 bps, Translation length: 38 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000560840.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000419101 (version 1)

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Transcript: ENST00000560840.1 IREB2-004

Summary