Transcript: ENST00000546983.1 NKX2-1-005

Description

NK2 homeobox 1 [Source:HGNC Symbol;Acc:11825]

Gene Synonyms

BCH, BHC, NK-2, NKX2.1, NKX2A, TEBP, TITF1, TTF-1, TTF1

Location

Chromosome 14: 36,988,792-36,990,154 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 1007 variant alleles and maps to 197 oligo probes.

Gene

This transcript is a product of gene ENSG00000136352.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000354822.5	NKX2-1-002	2186	401aa	ENSP00000346879.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41945	P43699 Q13306	NM_001079668.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000518149.1	NKX2-1-004	2583	371aa	ENSP00000428341.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9659	P43699	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000498187.2	NKX2-1-001	2330	371aa	ENSP00000429607.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9659	P43699	NM_003317.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000522719.2	NKX2-1-003	1417	371aa	ENSP00000429519.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9659	P43699	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546983.1	NKX2-1-005	653	34aa	ENSP00000449302.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VVG2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 653 bps, Translation length: 34 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000546983.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000409561 (version 1)

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Transcript: ENST00000546983.1 NKX2-1-005

Summary