Transcript: ENST00000550067.1 SCYL2-006

Description

SCY1-like 2 (S. cerevisiae) [Source:HGNC Symbol;Acc:19286]

Gene Synonyms

CVAK104, KIAA1360

Location

Chromosome 12: 100,661,027-100,690,585 forward strand.

About this transcript

This transcript has 4 exons, is associated with 13202 variant alleles and maps to 76 oligo probes.

Gene

This transcript is a product of gene ENSG00000136021.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000360820.2	SCYL2-001	5779	929aa	ENSP00000354061.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9076	F8VPW3 F8VSC5 Q6P3W7	NM_017988.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000549687.1	SCYL2-002	2328	681aa	ENSP00000448366.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VPW3 F8VSC5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000548392.1	SCYL2-004	790	76aa	ENSP00000450294.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VPW3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000550251.1	SCYL2-008	502	115aa	ENSP00000449567.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000548871.1	SCYL2-009	429	60aa	ENSP00000448400.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000550067.1	SCYL2-006	557	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000547202.1	SCYL2-011	894	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000547735.1	SCYL2-010	542	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000553148.1	SCYL2-007	523	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000549486.1	SCYL2-005	503	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 557 bps,

Version

ENST00000550067.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000408491 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000550067.1 SCYL2-006

Summary