Transcript: ENST00000548486.1 RDH5-004

Description

retinol dehydrogenase 5 (11-cis/9-cis) [Source:HGNC Symbol;Acc:9940]

Gene Synonyms

9cRDH, HSD17B9, RDH1, SDR9C5

Location

Chromosome 12: 56,114,177-56,116,123 forward strand.

About this transcript

This transcript has 3 exons, is associated with 1047 variant alleles and maps to 150 oligo probes.

Gene

This transcript is a product of gene ENSG00000135437.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000257895.5	RDH5-001	1269	318aa	ENSP00000257895.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31829	B4DDS2 F8VUB9 F8VVC7 Q92781	NM_002905.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000548082.1	RDH5-002	1259	318aa	ENSP00000447128.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31829	B4DDS2 F8VUB9 F8VVC7 Q92781	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000547072.1	RDH5-008	1054	221aa	ENSP00000449927.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VUB9 F8VVC7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000552930.1	RDH5-010	527	55aa	ENSP00000448014.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VUB9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000548123.1	RDH5-007	581	103aa	ENSP00000447513.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000553160.1	RDH5-005	522	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000550608.1	RDH5-003	1419	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000551444.1	RDH5-011	976	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000548486.1	RDH5-004	971	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000553187.1	RDH5-009	625	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000547301.1	RDH5-006	558	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 971 bps,

Version

ENST00000548486.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000407492 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000548486.1 RDH5-004

Summary