Transcript: ENST00000532332.2 PRPH-004

Description

peripherin [Source:HGNC Symbol;Acc:9461]

Gene Synonyms

NEF4, PRPH1

Location

Chromosome 12: 49,690,785-49,692,375 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 10 domains and features, is associated with 944 variant alleles and maps to 291 oligo probes.

Gene

This transcript is a product of gene ENSG00000135406.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000257860.4	PRPH-001	3241	470aa	ENSP00000257860.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8783	P41219	NM_006262.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000532332.2	PRPH-004	840	200aa	ENSP00000437182.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000451891.4	PRPH-002	704	207aa	ENSP00000408897.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W835	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000551194.1	PRPH-008	564	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000533401.1	PRPH-006	946	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000530631.1	PRPH-003	865	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000537252.1	PRPH-007	630	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 840 bps, Translation length: 200 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000532332.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000393383 (version 2)

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Transcript: ENST00000532332.2 PRPH-004

Summary