Transcript: ENST00000257860.4 PRPH-001

Description

peripherin [Source:HGNC Symbol;Acc:9461]

Gene Synonyms

NEF4, PRPH1

Location

Chromosome 12: 49,687,485-49,692,465 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 20 domains and features, is associated with 2772 variant alleles and maps to 466 oligo probes.

Gene

This transcript is a product of gene ENSG00000135406.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000257860.4	PRPH-001	3241	470aa	ENSP00000257860.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8783	P41219	NM_006262.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000532332.2	PRPH-004	840	200aa	ENSP00000437182.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000451891.4	PRPH-002	704	207aa	ENSP00000408897.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W835	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000551194.1	PRPH-008	564	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000533401.1	PRPH-006	946	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000530631.1	PRPH-003	865	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000537252.1	PRPH-007	630	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 3,241 bps, Translation length: 470 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P41219

CCDS

This transcript is a member of the Human CCDS set: CCDS8783

Version

ENST00000257860.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000393381 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000257860.4 PRPH-001

Summary