Transcript: ENST00000375958.3 ERCC5-003

Description

excision repair cross-complementing rodent repair deficiency, complementation group 5 [Source:HGNC Symbol;Acc:3437]

Gene Synonyms

COFS3, ERCM2, UVDR, XPG, XPGC

Location

Chromosome 13: 103,498,462-103,506,283 forward strand.

About this transcript

This transcript has 3 exons, is associated with 3447 variant alleles and maps to 143 oligo probes.

Gene

This transcript is a product of gene ENSG00000134899.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000355739.4	ERCC5-001	5076	1186aa	ENSP00000347978.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32004	P28715	NM_000123.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000375954.1	ERCC5-006	2986	419aa	ENSP00000365121.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P28715	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535557.1	ERCC5-201	1142	232aa	ENSP00000442117.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9HD60	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000472151.1	ERCC5-002	635	43aa	ENSP00000436083.1	Nonsense mediated decay		F2Z2A1	-	-
ENST00000472247.1	ERCC5-005	710	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481099.1	ERCC5-004	798	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000375958.3	ERCC5-003	596	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 596 bps,

Version

ENST00000375958.3

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000045710 (version 2)

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Transcript: ENST00000375958.3 ERCC5-003

Summary