Transcript: ENST00000578272.1 MBD2-003

Description

methyl-CpG binding domain protein 2 [Source:HGNC Symbol;Acc:6917]

Gene Synonyms

DMTase, NY-CO-41

Location

Chromosome 18: 51,686,128-51,731,391 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 3 domains and features, is associated with 17882 variant alleles and maps to 145 oligo probes.

Gene

This transcript is a product of gene ENSG00000134046.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000256429.3	MBD2-001	4080	411aa	ENSP00000256429.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11953	O60535 Q69YZ5 Q9UBB5	NM_003927.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000398398.2	MBD2-005	1237	241aa	ENSP00000381435.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000583046.1	MBD2-002	1182	302aa	ENSP00000464554.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45871	Q9UBB5	NM_015832.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000578272.1	MBD2-003	701	72aa	ENSP00000462393.1	Nonsense mediated decay		J3KSA7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000579025.1	MBD2-004	241	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 3, Transcript length: 701 bps, Translation length: 72 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000578272.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000447958 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000578272.1 MBD2-003

Summary