Transcript: ENST00000577335.1 SCO1-006

Description

SCO1 cytochrome c oxidase assembly protein [Source:HGNC Symbol;Acc:10603]

Gene Synonyms

SCOD1

Location

About this transcript

This transcript has 3 exons, is annotated with 2 domains and features, is associated with 2449 variant alleles and maps to 99 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000255390.5	SCO1-001	1749	301aa	ENSP00000255390.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11158	J3QR42 K7EMB5 O75880	NM_004589.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000577427.1	SCO1-002	1601	270aa	ENSP00000463387.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QL56 J3QR42 K7EMB5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000577335.1	SCO1-006	571	91aa	ENSP00000464032.1	Nonsense mediated decay		J3QR42	-	-
ENST00000582053.1	SCO1-003	565	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000579396.1	SCO1-004	563	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 571 bps, Translation length: 91 residues

Version

ENST00000577335.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000440329 (version 1)