Transcript: ENST00000579396.1 SCO1-004

Description

SCO1 cytochrome c oxidase assembly protein [Source:HGNC Symbol;Acc:10603]

Gene Synonyms

SCOD1

Location

About this transcript

This transcript has 2 exons, is associated with 1247 variant alleles and maps to 75 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000255390.5	SCO1-001	1749	301aa	ENSP00000255390.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11158	J3QR42 K7EMB5 O75880	NM_004589.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000577427.1	SCO1-002	1601	270aa	ENSP00000463387.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QL56 J3QR42 K7EMB5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000577335.1	SCO1-006	571	91aa	ENSP00000464032.1	Nonsense mediated decay		J3QR42	-	-
ENST00000582053.1	SCO1-003	565	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000579396.1	SCO1-004	563	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 563 bps,

Version

ENST00000579396.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000440331 (version 1)