Transcript: ENST00000550872.1 CHMP1A-005

Description

charged multivesicular body protein 1A [Source:HGNC Symbol;Acc:8740]

Gene Synonyms

CHMP1, KIAA0047, PCH8, PCOLN3, PRSM1, VPS46-1, VPS46A, Vps46A

Location

Chromosome 16: 89,715,587-89,724,105 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 5543 variant alleles and maps to 122 oligo probes.

Gene

This transcript is a product of gene ENSG00000131165.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000397901.3	CHMP1A-001	2483	196aa	ENSP00000380998.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45552	F5H875 Q9HD42	NM_002768.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000253475.5	CHMP1A-201	2332	240aa	ENSP00000253475.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NG32	NM_001083314.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535997.2	CHMP1A-002	2295	132aa	ENSP00000442120.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H875	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000550102.1	CHMP1A-011	803	187aa	ENSP00000449243.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VVT7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000549328.1	CHMP1A-009	1003	181aa	ENSP00000447899.1	Nonsense mediated decay		F8VUA2	-	-
ENST00000547614.1	CHMP1A-010	653	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000547687.1	CHMP1A-004	2007	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000549139.1	CHMP1A-008	812	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000551981.1	CHMP1A-006	689	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000548650.1	CHMP1A-007	566	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000550872.1	CHMP1A-005	533	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 533 bps,

Version

ENST00000550872.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000404591 (version 1)

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Transcript: ENST00000550872.1 CHMP1A-005

Summary