Transcript: ENST00000397901.3 CHMP1A-001

Description

charged multivesicular body protein 1A [Source:HGNC Symbol;Acc:8740]

Gene Synonyms

CHMP1, KIAA0047, PCH8, PCOLN3, PRSM1, VPS46-1, VPS46A, Vps46A

Location

Chromosome 16: 89,710,839-89,724,253 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 5 domains and features, is associated with 8956 variant alleles and maps to 434 oligo probes.

Gene

This transcript is a product of gene ENSG00000131165.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000397901.3	CHMP1A-001	2483	196aa	ENSP00000380998.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45552	F5H875 Q9HD42	NM_002768.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000253475.5	CHMP1A-201	2332	240aa	ENSP00000253475.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NG32	NM_001083314.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535997.2	CHMP1A-002	2295	132aa	ENSP00000442120.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H875	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000550102.1	CHMP1A-011	803	187aa	ENSP00000449243.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VVT7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000549328.1	CHMP1A-009	1003	181aa	ENSP00000447899.1	Nonsense mediated decay		F8VUA2	-	-
ENST00000547614.1	CHMP1A-010	653	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000547687.1	CHMP1A-004	2007	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000549139.1	CHMP1A-008	812	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000551981.1	CHMP1A-006	689	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000548650.1	CHMP1A-007	566	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000550872.1	CHMP1A-005	533	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 2,483 bps, Translation length: 196 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9HD42

CCDS

This transcript is a member of the Human CCDS set: CCDS45552

Version

ENST00000397901.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000404581 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000397901.3 CHMP1A-001

Summary