Transcript: ENST00000476998.1 ATXN10-004

Description

ataxin 10 [Source:HGNC Symbol;Acc:10549]

Gene Synonyms

E46L, FLJ37990, HUMEEP, SCA10

Location

Chromosome 22: 46,099,853-46,134,719 forward strand.

About this transcript

This transcript has 4 exons, is associated with 14952 variant alleles and maps to 94 oligo probes.

Gene

This transcript is a product of gene ENSG00000130638.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000252934.5	ATXN10-001	3329	475aa	ENSP00000252934.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14070	Q9NTC6 Q9UBB4	NM_013236.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381061.4	ATXN10-201	3135	411aa	ENSP00000370449.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54540	Q9NTC6 Q9UBB4	NM_001167621.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000435026.1	ATXN10-010	653	197aa	ENSP00000391117.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AHE4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000402380.3	ATXN10-009	564	126aa	ENSP00000385624.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AHE3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000451241.1	ATXN10-007	514	172aa	ENSP00000414080.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000498009.1	ATXN10-002	873	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000493643.1	ATXN10-006	617	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000476998.1	ATXN10-004	482	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000464482.1	ATXN10-008	439	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470722.1	ATXN10-003	391	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483549.1	ATXN10-005	778	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 482 bps,

Version

ENST00000476998.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000322280 (version 1)

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Transcript: ENST00000476998.1 ATXN10-004

Summary