Transcript: ENST00000562548.1 LOXL1-005

Description

lysyl oxidase-like 1 [Source:HGNC Symbol;Acc:6665]

Gene Synonyms

LOL, LOXL

Location

About this transcript

This transcript has 3 exons, is associated with 2163 variant alleles and maps to 238 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261921.7	LOXL1-001	2351	574aa	ENSP00000261921.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10253	Q08397	NM_005576.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000566011.1	LOXL1-002	2786	431aa	ENSP00000457827.1	Nonsense mediated decay		H3BUV8	-	-
ENST00000567675.1	LOXL1-006	460	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000562548.1	LOXL1-005	1110	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000566530.1	LOXL1-003	557	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,110 bps,

Version

ENST00000562548.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000419947 (version 2)