Transcript: ENST00000560809.1 MYO5C-005

Description

myosin VC [Source:HGNC Symbol;Acc:7604]

Gene Synonyms

MGC74969

Location

Chromosome 15: 52,484,856-52,587,853 reverse strand.

About this transcript

This transcript has 38 exons, is annotated with 10 domains and features, is associated with 45516 variant alleles and maps to 910 oligo probes.

Gene

This transcript is a product of gene ENSG00000128833.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261839.7	MYO5C-001	6971	1742aa	ENSP00000261839.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42036	H0YM93 Q14783 Q9NQX4	NM_018728.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000443683.2	MYO5C-201	3074	373aa	ENSP00000410582.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PE01 Q14783	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558479.1	MYO5C-007	770	106aa	ENSP00000453514.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YM93 Q14783	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000560809.1	MYO5C-005	6076	269aa	ENSP00000453641.1	Nonsense mediated decay		H0YM93 H0YMK3 Q14783	-	-
ENST00000558902.1	MYO5C-002	3074	153aa	ENSP00000453517.1	Nonsense mediated decay		H0YM96	-	-
ENST00000559459.1	MYO5C-004	2129	430aa	ENSP00000454064.1	Nonsense mediated decay		H0YM93 Q14783 Q6P1W8	-	-
ENST00000541028.1	MYO5C-003	999	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000559434.1	MYO5C-006	2517	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000559696.1	MYO5C-009	837	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000558242.1	MYO5C-008	492	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 38, Coding exons: 7, Transcript length: 6,076 bps, Translation length: 269 residues

Version

ENST00000560809.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000419563 (version 1)

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Transcript: ENST00000560809.1 MYO5C-005

Summary