Transcript: ENST00000427254.1 BANF2-003

Description

barrier to autointegration factor 2 [Source:HGNC Symbol;Acc:16172]

Gene Synonyms

BAF-L, BAF2, BAFL, C20orf179, dJ803K15.1

Location

Chromosome 20: 17,680,587-17,705,796 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 6 domains and features, is associated with 10776 variant alleles and maps to 111 oligo probes.

Gene

This transcript is a product of gene ENSG00000125888.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000545418.2	BANF2-005	360	97aa	ENSP00000439128.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54449	B1AM15 Q9H503	NM_001159495.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000427254.1	BANF2-003	623	42aa	ENSP00000398738.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AM15	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000246090.5	BANF2-002	595	90aa	ENSP00000246090.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13129	B1AM15 Q9H503	NM_178477.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000377805.3	BANF2-001	444	90aa	ENSP00000367036.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13129	B1AM15 Q9H503	NM_001014977.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000467330.1	BANF2-004	464	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 1, Transcript length: 623 bps, Translation length: 42 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000427254.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000127402 (version 2)

Annotation Attributes

dotter confirmed [Definitions]

low sequence quality

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000427254.1 BANF2-003

Summary