Transcript: ENST00000610179.1 PANK2-008

Description

pantothenate kinase 2 [Source:HGNC Symbol;Acc:15894]

Gene Synonyms

C20orf48, FLJ11729, HARP, HSS, NBIA1, PKAN

Location

Chromosome 20: 3,870,062-3,904,349 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 11 domains and features, is associated with 17844 variant alleles and maps to 302 oligo probes.

Gene

This transcript is a product of gene ENSG00000125779.17 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000316562.4	PANK2-007	2280	570aa	ENSP00000313377.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13071	A4FU43 D3DVZ1 Q52M85 Q9BZ23	NM_153638.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000497424.1	PANK2-001	4815	279aa	ENSP00000417609.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13072	A4FU43 D3DVZ1 Q52M85 Q9BZ23	NM_153640.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000610179.1	PANK2-008	1807	447aa	ENSP00000477429.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A4FU43 D3DVZ1 Q52M85	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000495692.1	PANK2-003	967	115aa	ENSP00000476745.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000336066.3	PANK2-002	1843	158aa	ENSP00000477229.1	Nonsense mediated decay		-	-	-
ENST00000464452.1	PANK2-005	771	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471830.1	PANK2-004	622	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,807 bps, Translation length: 447 residues

Version

ENST00000610179.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000473149 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000610179.1 PANK2-008

Summary