Transcript: ENST00000539566.1 SLC12A5-004

Description

solute carrier family 12 (potassium/chloride transporter), member 5 [Source:HGNC Symbol;Acc:13818]

Gene Synonyms

KCC2, KIAA1176

Location

Chromosome 20: 44,657,863-44,678,292 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 7 domains and features, is associated with 9882 variant alleles and maps to 216 oligo probes.

Gene

This transcript is a product of gene ENSG00000124140.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000454036.2	SLC12A5-003	3566	1139aa	ENSP00000387694.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46610	B7Z3I0 Q9H2X9	NM_001134771.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000243964.3	SLC12A5-002	5989	1116aa	ENSP00000243964.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13391	B7Z3I0 Q5VZ42 Q9H2X9	NM_020708.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000372315.1	SLC12A5-001	1549	285aa	ENSP00000361389.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5VZ42	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000608944.1	SLC12A5-005	560	111aa	ENSP00000476885.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539566.1	SLC12A5-004	1105	186aa	ENSP00000446091.1	Nonsense mediated decay		B7Z3T3	-	-
ENST00000413737.1	SLC12A5-008	400	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000608594.1	SLC12A5-006	359	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000428198.1	SLC12A5-007	248	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 7, Transcript length: 1,105 bps, Translation length: 186 residues

Version

ENST00000539566.1

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000471542 (version 1)

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Transcript: ENST00000539566.1 SLC12A5-004

Summary