Transcript: ENST00000548980.1 NCKAP1L-006

Description

NCK-associated protein 1-like [Source:HGNC Symbol;Acc:4862]

Gene Synonyms

HEM1

Location

Chromosome 12: 54,925,991-54,930,336 forward strand.

About this transcript

This transcript has 3 exons, is associated with 1746 variant alleles and maps to 93 oligo probes.

Gene

This transcript is a product of gene ENSG00000123338.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000293373.6	NCKAP1L-001	4720	1127aa	ENSP00000293373.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31813	B2RA26 P55160 Q5XG97 Q9BV52	NM_005337.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545638.2	NCKAP1L-002	3612	1077aa	ENSP00000445596.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53799	B2RA26 P55160 Q5XG97 Q9BV52	NM_001184976.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000548221.1	NCKAP1L-003	3559	449aa	ENSP00000447246.1	Nonsense mediated decay		F8W050	-	-
ENST00000552211.1	NCKAP1L-007	597	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000548916.1	NCKAP1L-008	708	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000547500.1	NCKAP1L-005	636	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000549451.1	NCKAP1L-004	629	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000548980.1	NCKAP1L-006	562	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 562 bps,

Version

ENST00000548980.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000406202 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000548980.1 NCKAP1L-006

Summary