Transcript: ENST00000527424.1 RNF170-001

Description

ring finger protein 170 [Source:HGNC Symbol;Acc:25358]

Gene Synonyms

DKFZP564A022, SNAX1

Location

Chromosome 8: 42,708,444-42,751,864 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 14 domains and features, is associated with 18120 variant alleles and maps to 471 oligo probes.

Gene

This transcript is a product of gene ENSG00000120925.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000534961.1	RNF170-202	4116	258aa	ENSP00000445725.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6138	E9PNG8 E9PP55 Q96K19	NM_001160223.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000527424.1	RNF170-001	3880	258aa	ENSP00000434797.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6138	E9PNG8 E9PP55 Q96K19	NM_030954.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000319073.4	RNF170-201	3812	162aa	ENSP00000325969.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96K19	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000319104.3	RNF170-005	1866	200aa	ENSP00000326138.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55230	E9PNG8 E9PP55 Q96K19	NM_001160224.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000526349.1	RNF170-003	1338	174aa	ENSP00000435782.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55229	Q96K19	NM_001160225.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000531440.1	RNF170-007	580	115aa	ENSP00000436416.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PNG8 E9PP55	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000524954.1	RNF170-006	195	45aa	ENSP00000437146.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PNG8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000240159.4	RNF170-004	2023	116aa	ENSP00000240159.4	Nonsense mediated decay		E9PNG8 Q96K19	-	-
ENST00000528318.1	RNF170-002	1169	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 3,880 bps, Translation length: 258 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96K19

CCDS

This transcript is a member of the Human CCDS set: CCDS6138

Version

ENST00000527424.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000383166 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000527424.1 RNF170-001

Summary