Transcript: ENST00000480217.1 SET-004

Description

SET nuclear oncogene [Source:HGNC Symbol;Acc:10760]

Gene Synonyms

2PP2A, I2PP2A, IGAAD, IPP2A2, PHAPII, SETP18, TAF-I, TAF-IBETA

Location

Chromosome 9: 131,452,564-131,455,195 forward strand.

About this transcript

This transcript has 5 exons, is associated with 1677 variant alleles and maps to 260 oligo probes.

Gene

This transcript is a product of gene ENSG00000119335.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000372692.4	SET-001	2850	290aa	ENSP00000361777.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48037	B2REB7 Q01105 Q5VXV3	NM_001287737.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000322030.8	SET-002	2915	277aa	ENSP00000318012.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6907	Q01105	NM_003011.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000372688.4	SET-201	1279	266aa	ENSP00000361773.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59150	Q01105	NM_001248001.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000372686.5	SET-010	1029	265aa	ENSP00000361771.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q01105	-	-
ENST00000409104.3	SET-003	962	268aa	ENSP00000387321.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59149	Q01105	NM_001248000.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000454747.1	SET-009	235	32aa	ENSP00000410806.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B2REB7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000477806.1	SET-008	957	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466009.1	SET-005	597	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000480217.1	SET-004	509	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485056.1	SET-011	483	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000480536.1	SET-012	388	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 509 bps,

Version

ENST00000480217.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000054479 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000480217.1 SET-004

Summary