Transcript: ENST00000472070.1 SLC25A12-002

Description

solute carrier family 25 (aspartate/glutamate carrier), member 12 [Source:HGNC Symbol;Acc:10982]

Gene Synonyms

AGC1, ARALAR, ARALAR1, Aralar

Location

Chromosome 2: 172,641,342-172,645,452 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 1729 variant alleles and maps to 303 oligo probes.

Gene

This transcript is a product of gene ENSG00000115840.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000422440.2	SLC25A12-001	2979	678aa	ENSP00000388658.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33327	O75746	NM_003705.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000392592.4	SLC25A12-201	2429	571aa	ENSP00000376371.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KR64	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000263812.4	SLC25A12-006	2429	87aa	ENSP00000263812.4	Nonsense mediated decay		F8W9J0	-	-
ENST00000426896.1	SLC25A12-007	911	210aa	ENSP00000413968.1	Nonsense mediated decay		B4DGK6	-	-
ENST00000475360.2	SLC25A12-003	829	175aa	ENSP00000437845.1	Nonsense mediated decay		H0YFB2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000472748.1	SLC25A12-009	630	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000484227.1	SLC25A12-008	556	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000464063.1	SLC25A12-010	553	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000494892.1	SLC25A12-005	319	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000472070.1	SLC25A12-002	1889	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000485880.1	SLC25A12-004	552	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,889 bps,

Version

ENST00000472070.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000259011 (version 1)

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Transcript: ENST00000472070.1 SLC25A12-002

Summary