Transcript: ENST00000421496.1 GGCX-009

Description

gamma-glutamyl carboxylase [Source:HGNC Symbol;Acc:4247]

Gene Synonyms

GC, VKCFD1

Location

Chromosome 2: 85,783,305-85,788,616 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 4 domains and features, is associated with 2281 variant alleles and maps to 133 oligo probes.

Gene

This transcript is a product of gene ENSG00000115486.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000233838.4	GGCX-001	7569	758aa	ENSP00000233838.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1978	P38435	NM_000821.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000430215.3	GGCX-007	2314	701aa	ENSP00000408045.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46353	P38435	NM_001142269.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000423570.1	GGCX-002	1339	123aa	ENSP00000389426.1	Nonsense mediated decay		F8WDU9	-	-
ENST00000421496.1	GGCX-009	540	66aa	ENSP00000400384.1	Nonsense mediated decay		F8WCF0	-	-
ENST00000428479.3	GGCX-005	533	73aa	ENSP00000390748.3	Nonsense mediated decay		F8WB98	-	-
ENST00000473665.1	GGCX-010	869	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000482662.1	GGCX-012	720	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496962.1	GGCX-003	684	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481541.1	GGCX-004	600	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465637.1	GGCX-006	563	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 540 bps, Translation length: 66 residues

Version

ENST00000421496.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000329468 (version 2)

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Transcript: ENST00000421496.1 GGCX-009

Summary