Transcript: ENST00000478440.1 ITGA4-005

Description

integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor) [Source:HGNC Symbol;Acc:6140]

Gene Synonyms

CD49D, IA4

Location

Chromosome 2: 182,322,968-182,344,443 forward strand.

About this transcript

This transcript has 3 exons, is associated with 10312 variant alleles and maps to 124 oligo probes.

Gene

This transcript is a product of gene ENSG00000115232.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000397033.2	ITGA4-001	4189	1032aa	ENSP00000380227.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42788	E7EP60 P13612 Q8IUA2	NM_000885.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000233573.6	ITGA4-006	2070	614aa	ENSP00000233573.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EP60 Q6PJE7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000339307.4	ITGA4-003	1403	195aa	ENSP00000340149.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q7Z4L6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000478440.1	ITGA4-005	1144	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000476089.1	ITGA4-002	1846	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465522.1	ITGA4-004	1721	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476824.1	ITGA4-008	1004	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000490435.1	ITGA4-009	720	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000484404.1	ITGA4-007	592	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000473002.1	ITGA4-010	573	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000468948.1	ITGA4-011	393	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,144 bps,

Version

ENST00000478440.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000334431 (version 1)

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Transcript: ENST00000478440.1 ITGA4-005

Summary