Transcript: ENST00000478440.1 ITGA4-005

Description

integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor) [Source:HGNC Symbol;Acc:6140]

Gene Synonyms

CD49D, IA4

Location

Chromosome 2: 182,322,968-182,344,443 forward strand.

About this transcript

This transcript has 3 exons, is associated with 10312 variant alleles and maps to 124 oligo probes.

Gene

This transcript is a product of gene ENSG00000115232.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000397033.2	ITGA4-001	4189	1032aa	ENSP00000380227.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42788	E7EP60 P13612 Q8IUA2	NM_000885.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000233573.6	ITGA4-006	2070	614aa	ENSP00000233573.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EP60 Q6PJE7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000339307.4	ITGA4-003	1403	195aa	ENSP00000340149.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q7Z4L6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000478440.1	ITGA4-005	1144	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000476089.1	ITGA4-002	1846	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465522.1	ITGA4-004	1721	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476824.1	ITGA4-008	1004	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000490435.1	ITGA4-009	720	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000484404.1	ITGA4-007	592	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000473002.1	ITGA4-010	573	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000468948.1	ITGA4-011	393	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,144 bps,

Version

ENST00000478440.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000334431 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000478440.1 ITGA4-005

Summary