Transcript: ENST00000231061.4 SPARC-001

Description

secreted protein, acidic, cysteine-rich (osteonectin) [Source:HGNC Symbol;Acc:11219]

Gene Synonyms

Location

Chromosome 5: 151,040,657-151,066,726 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 19 domains and features, is associated with 11299 variant alleles and maps to 783 oligo probes.

Gene

This transcript is a product of gene ENSG00000113140.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000231061.4	SPARC-001	3701	303aa	ENSP00000231061.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4318	D3DQH8 E5RJA5 E5RK62 F5GY03 F5H4E2 P09486	NM_003118.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000521569.1	SPARC-005	602	115aa	ENSP00000428119.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RK62	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000538026.1	SPARC-008	576	149aa	ENSP00000440127.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RK62 F5GY03	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000539687.1	SPARC-007	511	111aa	ENSP00000444998.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RJA5 F5H4E2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000522348.1	SPARC-004	497	53aa	ENSP00000429152.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RJA5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000537849.1	SPARC-009	218	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000520687.1	SPARC-002	1598	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000521327.1	SPARC-003	864	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000524277.1	SPARC-006	505	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 3,701 bps, Translation length: 303 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P09486

CCDS

This transcript is a member of the Human CCDS set: CCDS4318

Version

ENST00000231061.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000252430 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000231061.4 SPARC-001

Summary