Transcript: ENST00000461701.1 ATG2A-003

Description

autophagy related 2A [Source:HGNC Symbol;Acc:29028]

Gene Synonyms

KIAA0404

Location

Chromosome 11: 64,680,083-64,684,678 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 2394 variant alleles and maps to 290 oligo probes.

Gene

This transcript is a product of gene ENSG00000110046.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000377264.3	ATG2A-001	6357	1938aa	ENSP00000366475.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31602	B4DV45 Q2TAZ0	NM_015104.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000421419.2	ATG2A-201	6376	1940aa	ENSP00000410522.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DV45 Q2TAZ0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000418259.1	ATG2A-004	5654	1742aa	ENSP00000413716.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000461701.1	ATG2A-003	2031	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000461955.1	ATG2A-006	575	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000472525.1	ATG2A-005	515	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 2,031 bps,

Version

ENST00000461701.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000143226 (version 1)

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Transcript: ENST00000461701.1 ATG2A-003

Summary