Transcript: ENST00000582017.1 CCL2-003

Description

chemokine (C-C motif) ligand 2 [Source:HGNC Symbol;Acc:10618]

Gene Synonyms

GDCF-2, HC11, HSMCR30, MCAF, MCP-1, MCP1, MGC9434, SCYA2, SMC-CF

Location

About this transcript

This transcript has 1 exon, is associated with 469 variant alleles and maps to 338 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000225831.4	CCL2-001	741	99aa	ENSP00000225831.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11277	P13500 Q6UZ82	NM_002982.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000580907.1	CCL2-004	736	65aa	ENSP00000462156.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KRT7 Q6UZ82	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000582017.1	CCL2-003	996	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 1, Coding exons: 0, Transcript length: 996 bps,

Version

ENST00000582017.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000447597 (version 1)

Annotation Attributes

retained intron CDS [Definitions]