Transcript: ENST00000369452.4 SHOC2-001

Description

soc-2 suppressor of clear homolog (C. elegans) [Source:HGNC Symbol;Acc:15454]

Gene Synonyms

KIAA0862, SIAA0862, SOC-2, SOC2, SUR-8, SUR8

Location

Chromosome 10: 112,679,305-112,773,425 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 71 domains and features, is associated with 38970 variant alleles and maps to 477 oligo probes.

Gene

This transcript is a product of gene ENSG00000108061.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000369452.4	SHOC2-001	3943	582aa	ENSP00000358464.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7568	Q9UQ13	NM_007373.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000265277.5	SHOC2-201	3806	536aa	ENSP00000265277.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58095	Q9UQ13	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000451838.1	SHOC2-002	2967	372aa	ENSP00000408275.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	NM_001269039.1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000489390.1	SHOC2-003	815	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489783.1	SHOC2-004	749	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000480155.1	SHOC2-005	650	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000497305.1	SHOC2-006	325	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 3,943 bps, Translation length: 582 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UQ13

CCDS

This transcript is a member of the Human CCDS set: CCDS7568

Version

ENST00000369452.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000050355 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000369452.4 SHOC2-001

Summary